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951.
The simultaneous analysis of mixed discrete and continuous outcomes using nonlinear threshold models
Todd Coffey Chris Gennings 《Journal of Agricultural, Biological & Environmental Statistics》2007,12(1):55-77
Mixed discrete and continuous outcomes are commonly measured on each experimental unit in dose-response studies in toxicology.
The dose-response relationships for these outcomes often have dose thresholds and nonlinear patterns. In addition, the endpoints
are typically correlated, and a statistical analysis that incorporates the association may result in improved precision. We
propose an extension of the generalized estimating equation (GEE) methodology to simultaneously analyze binary, count, and
continuous outcomes with nonlinear threshold models that incorporates the intra-subject correlation. The methodology uses
a quasi-likelihood framework and a working correlation matrix, and is appropriate when the marginal expectation of each outcome
is of primary interest and the correlation between endpoints is a nuisance parameter. Because the derivatives of threshold
models are not continuous at each point of the parameter space, we describe the necessary modifications that result in asymptotically
normal and consistent estimators. Using dose-response data from a neurotoxicity experiment, the methodology is illustrated
by analyzing five outcomes of mixed type with nonlinear threshold models. In this example, the incorporation of the intra-subject
correlation resulted in decreased standard errors for the threshold parameters. 相似文献
952.
Background and Objectives
Soil nitrate nitrogen (NO3 −-N) accumulation is related closely to NO3 − leaching, which is an important issue in groundwater pollution, especially in intensive agricultural areas with saline soils where volumes of water are used in irrigation to avoid salt accumulation in the root zone. However, in the saline environment in Hai River Basin, China, the importance of detailed research into NO3 −-N distribution in the root zone has not been adequately recognized. Considering the impacts of eco-environmental system N and crop production, the present study aimed at contributing to an understanding of the effects of N application rate on soil NO3 −-N distribution, NO3 −-N residue, N loss, and maize (Zea mays L.) yield in this region. 相似文献953.
Joshua M. Tebbs Melinda H. McCann 《Journal of Agricultural, Biological & Environmental Statistics》2007,12(4):534-551
Insect-vectored plant diseases impact the agricultural community each year by affecting the economic value, the quantity,
and the quality of crops. Controlling the spread of disease is an important area in risk assessment, and understanding the
dynamics of vector populations helps researchers to develop effective treatments. In this article, we consider an experimental
design commonly used by researchers who study plant disease and examine large-sample, likelihood-based hypothesis tests that
can be used to characterize disease-transmission behavior in a stratified population. Small-sample size and power results
along with design considerations are provided. We illustrate our testing procedures using two real data examples and provide
recommendations for plant-disease researchers in the field. 相似文献
954.
Levels of active oxygen species are controlled by ascorbic acid and anthocyanin in Arabidopsis 总被引:1,自引:0,他引:1
Nagata T Todoriki S Masumizu T Suda I Furuta S Du Z Kikuchi S 《Journal of agricultural and food chemistry》2003,51(10):2992-2999
Stabilization of the levels of active oxygen species (AOS) is important to the survival of organisms. To clarify the system controlling levels of AOS in plants, this study used an electron spin resonance (ESR) method to directly measure superoxide radical (O(2)(.-)) scavenging activities in the wild-type Arabidopsis thaliana (Col and Ler ecotypes), two anthocyanin mutants (tt3 and ttg1), and an ascorbic acid mutant (vtc1). Under ordinary growth conditions, Arabidopsis contained superoxide-scavenging activity (SOSA) of approximately 300-500 SOD units/g of fresh weight. The ESR pattern indicated that most (40-50%) of this activity was due to ascorbic acid. For the analysis of SOSA under conditions of oxidative stress, synthesis of AOS was induced by gamma-irradiation. The radical scavenging activity in irradiated plants increased approximately 10-fold following an associated increase in the accumulation of ascorbic acid and anthocyanin. The accumulation of ascorbic acid and anthocyanin was suppressed by treatment with an antioxidant before irradiation and was induced by treatment with a radical-generating reagent. The contributions of ascorbic acid and anthocyanin to the total superoxide radical scavenging activity differed among ecotypes. In the Ler ecotype, ascorbic acid accumulated at twice the level of that in the Col ecotype, and induction of anthocyanin was half that in Col. To confirm the activity of ascorbic acid and anthocyanin against AOS stress, the viability of the wild type and mutants (tt2, tt3,tt5, ttg1, and vtc1) was examined after gamma-irradiation. Only the plants in which ascorbic acid and anthocyanin were induced had the ability to grow and flower. 相似文献
955.
Abrie J. van der Merwe Albertus L. Pretorius 《Journal of Agricultural, Biological & Environmental Statistics》2003,8(3):328-343
This article applies Bayesian nonparametric techniques of analysis to the mixed linear model. The distribution of the random
effects is specific as a nonparametric prior. A Dirichlet process prior is specified on the space of prior distributions.
A modified Dirichlet process is described and applied using a Gibbs sampler. The approach is demonstrated in an investigation
of the changes over time of packed cell volume in two breeds of cattle. 相似文献
956.
中国北方典型地区农用地膜污染现状调查及其防治对策 总被引:10,自引:0,他引:10
通过对我国北方典型地区的调查,初步探索了该地区土壤农膜残留量和残膜特征.研究表明,河北省典型地区温室大棚、蔬菜田和作物田的农膜土壤残留量平均分别为5.629、7.369和2.822 kg·hm-2,黑龙江省典型地区温室大棚、蔬菜田和作物田残留量平均分别为4.169、3.682和2.430 kg·hm-2,各采样点之间存在着较大差异,但普遍较高,均明显高于未使用农膜的对照土壤.两地区之间除作物田的土壤农膜残留量没有明显差异外,河北地区其他两类土壤中的农膜残留量水平明显高于黑龙江地区,这种差异与各地区在农事活动及农膜使用上的差异具有一定的相关性.上述两地区土壤中残留农膜尺寸基本一致,主要集中在10~15 cm之间.该文针对我国目前农膜使用情况及其污染现状,提出了相应的防治对策. 相似文献
957.
Cyanobacteria are important for global nitrogen cycle and often form complex associations referred to as cyanobacterial mats
or periphyton that are common in tropical, limestone-based wetlands. The objective of this study was to monitor the nitrogen
fixation rate using the acetylene reduction assay of these cyanobacterial mats in a tropical, unfertilized, and protected
wetland. To account for temporal and spatial variation of nitrogenase activity, we were interested in seasons in a hydrological
cycle (dry, rains, and end of rains), sites with different vascular vegetation, and rates of nitrogenase activity in a 24-h
cycle. The annual average of nitrogenase activity was 22 nmol C2H4 cm−2 h−1, with a range of <6 to 35 nmol C2H4 cm−2 h−1, and the annual nitrogen fixation rate of our study site (9.0 g N m−2 year−1) is higher than similar estimates from other freshwater wetlands. There was a clear temporal pattern in nitrogenase activity
with a maximum rate occurring during the rainy season (August) and a maximum nitrogenase activity occurring between 0600 and
1200 hours. We found spatial differences in nitrogenase activity among the four sites that could be attributed to variations
in species composition within the periphyton. 相似文献
958.
Anthropogenic N-deposition represents a significant input of N into semi-arid chaparral and coastal sage scrub (CSS) shrublands
of southern California. High levels of atmospheric N deposition have the potential to increase soil C and N mineralization,
and we hypothesize that semi-arid shrubland soil exposed to long-term (decades) high N deposition will have significantly
higher C and N mineralization potentials. This hypothesis was tested in a laboratory incubation where the inorganic N (NH4+NO3) and CO2 production of soils maintained at a constant temperature of 25°C and a soil moisture of 0.25 g H2O/g (65% water-filled pore space) were sampled sequentially over a 50-week period. The temporal trend in cumulative C and
N mineralization was well described by a first- and zero-order model, respectively. Long-term atmospheric N deposition significantly
increased potential N mineralization but not C mineralization, and both the rate and total N mineralization were significantly
positively correlated with the surface (0–10 cm) soil δ
15N natural abundance and negatively correlated with the surface soil C:N ratio. While the incubation techniques used here do
not provide realistic estimates of in situ C or N mineralization, these assays indicate that atmospheric N deposition has
significantly altered ecosystem N storage and cycling. 相似文献
959.
Ilyas Siddique Caroline Gutjahr Gamini Seneviratne Broder Breckling Sudheera W. Ranwala Ian J. Alexander 《Biology and Fertility of Soils》2007,44(1):163-170
Topsoil properties were determined in forest gardens established about 20 years ago on eroded grassland soils (abandoned tea
lands) in the wet zone of the Sri Lankan highlands. They were compared with adjacent, eroded grasslands (abandoned tea lands)
on strongly weathered soils vs soils at earlier stages of pedogenic development in a two-way analysis of variance. Soil pH
in forest gardens was, on average, 6.1, nearly one unit higher than in the adjacent grasslands. In the garden soils, the cation
exchange capacity (CEC measured at pH 4.8) was nearly double, exchangeable calcium concentrations five times and exchangeable
magnesium three times as high as in the grasslands soils. Total soil N content was found to be nearly 40% higher in the gardens.
Topsoil gravel contents in the gardens were less than half as high as in the grasslands. The increases in exchangeable bases
and N in gardens, relative to grasslands, were attributed to increased nutrient retention and acquisition. Higher retention
was partly due to the higher CECpH4.8, and probably to reduced erosion and increased, continuous fine root density in the garden topsoils. Higher field CEC in
gardens was likely to result from generally higher C contents and from the reversal of acidification, presumably caused by
base accumulation and decomposition processes. Our results suggest that forest garden establishment on degraded grasslands
can lead to accumulation of mobile nutrients in the topsoil, probably due to increased nutrient retention, subsoil uptake
and litter input exceeding nutrient uptake by the standing biomass. 相似文献
960.
哈尔滨市农田防护林建设中存在认识不足、机制不活、管护不力,资金落实不到位,树种较为单一,林龄结构不合理,科技含量较低,林权改革相对滞后,风险防范机制不健全等问题。应从加强宣传、创新机制、强化管护,调整树种及林龄结构,拓宽筹资渠道,强化科技支撑,深化林权制度改革,完善补偿机制等方面加强农田防护林建设。 相似文献